Mon, 16 Sep 2013 20:27:28 -0400 |
Matt Shirley |
update to SRA toolkit 2.3.3-3
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Tue, 03 Sep 2013 22:02:30 -0400 |
Matt Shirley |
Disable caching, update descriptions, prune deprecated tools.
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Mon, 05 Aug 2013 12:54:03 -0400 |
Matt Shirley |
sea pileup accept text input
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Mon, 05 Aug 2013 11:43:37 -0400 |
Matt Shirley |
syntax error in sam dump text input
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Mon, 05 Aug 2013 10:53:43 -0400 |
Matt Shirley |
conditional output for sam dump
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Mon, 05 Aug 2013 10:11:15 -0400 |
Matt Shirley |
auto datatype for sam dump
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Mon, 05 Aug 2013 09:55:32 -0400 |
Matt Shirley |
add option to take plaintext file with accession on one line
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Mon, 05 Aug 2013 09:40:26 -0400 |
Matt Shirley |
add option to take plaintext file with accession on one line
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Mon, 05 Aug 2013 08:09:27 -0400 |
Matt Shirley |
add fastq output option to sam dump
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Sun, 04 Aug 2013 23:17:53 -0400 |
Matt Shirley |
bring pileup to parity with sam; fixed minMapq for sam
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Thu, 01 Aug 2013 13:57:27 -0400 |
Matt Shirley |
Exposed more options for fastq_dump and sam_dump
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Sun, 30 Jun 2013 19:50:44 -0400 |
Matt Shirley |
variable typos
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Sun, 30 Jun 2013 19:23:07 -0400 |
Matt Shirley |
properly end conditional statements
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Sun, 30 Jun 2013 19:20:38 -0400 |
Matt Shirley |
exposed many more options for fastq-dump
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Sun, 30 Jun 2013 16:18:09 -0400 |
Matt Shirley |
typo in input conditional
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Sun, 30 Jun 2013 11:27:51 -0400 |
Matt Shirley |
debug prefetch caching and accession input for fastq_dump
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Sun, 30 Jun 2013 11:12:31 -0400 |
Matt Shirley |
debug prefetch caching and accession input for fastq_dump
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Sat, 29 Jun 2013 16:14:32 -0400 |
Matt Shirley |
debug prefetch caching and accession input for fastq_dump
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Sat, 29 Jun 2013 16:01:28 -0400 |
Matt Shirley |
debug prefetch caching and accession input for fastq_dump
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Sat, 29 Jun 2013 15:53:14 -0400 |
Matt Shirley |
debug prefetch caching and accession input for fastq_dump
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Sat, 29 Jun 2013 15:49:44 -0400 |
Matt Shirley |
debug prefetch caching and accession input for fastq_dump
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Sat, 29 Jun 2013 11:14:03 -0400 |
Matt Shirley |
implement prefetch caching and accession input for fastq_dump
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Wed, 19 Jun 2013 16:48:18 -0400 |
Matt Shirley |
correct datatype for output
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Wed, 19 Jun 2013 16:46:16 -0400 |
Matt Shirley |
warning for sra_pileup
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Wed, 19 Jun 2013 16:44:33 -0400 |
Matt Shirley |
added vdb-validate tool
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Wed, 19 Jun 2013 14:11:37 -0400 |
Matt Shirley |
more fixes for sra datatype, added sra_pileup
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Wed, 19 Jun 2013 13:31:58 -0400 |
Matt Shirley |
fix datatype reference, increment versions
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Mon, 17 Jun 2013 21:41:27 -0400 |
Matt Shirley |
tweaks to fastq-dump command
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Mon, 17 Jun 2013 21:28:00 -0400 |
Matt Shirley |
revert previous commit
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Mon, 17 Jun 2013 21:22:17 -0400 |
Matt Shirley |
try static build to resolve missing libraries
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Mon, 17 Jun 2013 20:37:28 -0400 |
Matt Shirley |
updates to SRA datatype
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Mon, 17 Jun 2013 20:30:16 -0400 |
Matt Shirley |
updates to SRA datatype
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Mon, 17 Jun 2013 17:08:53 -0400 |
Matt Shirley |
update tool wrapper and increment version
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Mon, 17 Jun 2013 17:07:57 -0400 |
Matt Shirley |
fallback to getopt for fetch_sra.py
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Mon, 17 Jun 2013 16:17:33 -0400 |
Matt Shirley |
better sra_fetch code, compliant (?) datatype, updated dependencies in tool wrappers
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Mon, 17 Jun 2013 16:05:30 -0400 |
Matt Shirley |
debugging SRA datatype
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Mon, 17 Jun 2013 14:26:40 -0400 |
Matt Shirley |
updated sra_toolkit dependency in <requirements>
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Mon, 17 Jun 2013 14:22:57 -0400 |
Matt Shirley |
debugging SRA datatype
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Mon, 17 Jun 2013 14:07:05 -0400 |
Matt Shirley |
debugging automatic SRA build and install
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Mon, 17 Jun 2013 14:00:25 -0400 |
Matt Shirley |
debugging automatic SRA build and install
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Mon, 17 Jun 2013 13:37:47 -0400 |
Matt Shirley |
debugging automatic SRA build and install
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Mon, 17 Jun 2013 13:16:16 -0400 |
Matt Shirley |
debugging automatic SRA build and install
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Mon, 17 Jun 2013 13:05:59 -0400 |
Matt Shirley |
debugging automatic SRA build and install
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Mon, 17 Jun 2013 12:48:38 -0400 |
Matt Shirley |
debugging automatic SRA build and install
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Sun, 16 Jun 2013 22:07:21 -0400 |
Matt Shirley |
Update tool dependencies
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Wed, 29 May 2013 22:10:26 -0400 |
Matt Shirley |
tool dependencies for automated sra_sdk download and compilation
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Wed, 29 May 2013 22:08:19 -0400 |
Matt Shirley |
minor fixes
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Tue, 27 Nov 2012 13:44:28 -0500 |
matt-shirley |
Initial version - still need to test if datatype works correctly, and implement scripted download of SRA binaries.
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