Mercurial > repos > matt-shirley > sra_tools
changeset 11:cdba74ec9eca draft
updated sra_toolkit dependency in <requirements>
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Mon, 17 Jun 2013 14:26:40 -0400 |
| parents | 3b814b721838 |
| children | b77840618b8f |
| files | fastq_dump.xml sam_dump.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/fastq_dump.xml Mon Jun 17 14:22:57 2013 -0400 +++ b/fastq_dump.xml Mon Jun 17 14:26:40 2013 -0400 @@ -23,7 +23,7 @@ <exit_code range="127" level="fatal" description="Cannot find fastq-dump binary"/> </stdio> <requirements> - <requirement type="binary">fastq-dump</requirement> + <requirement type="package" version="2.3.2-4">sra_toolkit</requirement> </requirements> <help> This tool extracts fastqsanger reads from SRA archives using fastq-dump. The fastq-dump program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.
--- a/sam_dump.xml Mon Jun 17 14:22:57 2013 -0400 +++ b/sam_dump.xml Mon Jun 17 14:26:40 2013 -0400 @@ -10,7 +10,7 @@ <option value="--no-header">No</option> </param> <param format="text" name="aligned" type="select" value=""> - <label>Output unaligned reads</label> + <label>Output unaligned reads as well as aligned reads</label> <option value="">No</option> <option value="--unaligned">Yes</option> </param> @@ -24,7 +24,7 @@ <data format="sam" name="output"/> </outputs> <requirements> - <requirement type="binary">sam-dump</requirement> + <requirement type="package" version="2.3.2-4">sra_toolkit</requirement> </requirements> <help> This tool extracts SAM format reads from SRA archives using sam-dump. The sam-dump program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.