Mercurial > repos > matt-shirley > sra_tools
changeset 4:5d7baf38e470 draft
debugging automatic SRA build and install
author | Matt Shirley <mdshw5@gmail.com> |
---|---|
date | Mon, 17 Jun 2013 12:48:38 -0400 |
parents | 326ac8ebbcdd |
children | 38f78eee3216 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/tool_dependencies.xml Sun Jun 16 22:07:21 2013 -0400 +++ b/tool_dependencies.xml Mon Jun 17 12:48:38 2013 -0400 @@ -6,7 +6,7 @@ <action type="download_by_url">http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.2-4/sra_sdk-2.3.2-4.tar.gz</action> <action type="shell_command">make release</action> <action type="shell_command">make</action> - <action type="shell_command">if [[ $(uname -m) =~ x86_64 ]]; then export $BIN='bin64'; elif [[ $(uname -m) =~ i.86 ]]; then export $BIN='bin32'; fi</action> + <action type="shell_command">bash -c "if [[ $(uname -m) =~ x86_64 ]]; then export BIN='bin64'; elif [[ $(uname -m) =~ i.86 ]]; then export BIN='bin32'; fi"</action> <action type="move_directory_files"><source_directory>$BIN</source_directory><destination_directory>$INSTALL_DIR/bin</destination_directory></action> <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action> </actions>