# HG changeset patch
# User Matt Shirley <mdshw5@gmail.com>
# Date 1371487718 14400
# Node ID 5d7baf38e47093fc7c0a83e6dda64bd402896564
# Parent  326ac8ebbcdd2d9a1730a76e6cf39bead83b2e9e
debugging automatic SRA build and install

diff -r 326ac8ebbcdd -r 5d7baf38e470 tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Jun 16 22:07:21 2013 -0400
+++ b/tool_dependencies.xml	Mon Jun 17 12:48:38 2013 -0400
@@ -6,7 +6,7 @@
 	<action type="download_by_url">http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.2-4/sra_sdk-2.3.2-4.tar.gz</action>
 	<action type="shell_command">make release</action>
 	<action type="shell_command">make</action>
-	<action type="shell_command">if [[ $(uname -m) =~ x86_64 ]]; then export $BIN='bin64'; elif [[ $(uname -m) =~ i.86 ]]; then export $BIN='bin32'; fi</action>
+	<action type="shell_command">bash -c "if [[ $(uname -m) =~ x86_64 ]]; then export BIN='bin64'; elif [[ $(uname -m) =~ i.86 ]]; then export BIN='bin32'; fi"</action>
 	<action type="move_directory_files"><source_directory>$BIN</source_directory><destination_directory>$INSTALL_DIR/bin</destination_directory></action>
 	<action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action>
       </actions>