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changeset 31:85e47f636e10 draft

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debug prefetch caching and accession input for fastq_dump
author Matt Shirley <mdshw5@gmail.com>
date Sun, 30 Jun 2013 11:12:31 -0400
parents 98f3e4be6d72
children a7d8d22f9ad2
files fastq_dump.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_dump.xml	Sat Jun 29 16:14:32 2013 -0400
+++ b/fastq_dump.xml	Sun Jun 30 11:12:31 2013 -0400
@@ -4,7 +4,7 @@
     #if $input.input_select=="file"
         fastq-dump --log-level fatal --accession '${input.sra.name}' --stdout $split $aligned $input.file > $output 
     #else
-        fastq-dump --log-level fatal --accession $input.accession --stdout $split $aligned $input.accession > $output 
+        fastq-dump --log-level fatal $input.accession > $output 
     #end if
   </command>
   <version_string>fastq-dump --version</version_string>