# HG changeset patch
# User Matt Shirley <mdshw5@gmail.com>
# Date 1372605151 14400
# Node ID 85e47f636e106fe6ea12a154bfd7581f9fd11a1a
# Parent  98f3e4be6d72e12f0c3604cc5fe9a1a9f7324240
debug prefetch caching and accession input for fastq_dump

diff -r 98f3e4be6d72 -r 85e47f636e10 fastq_dump.xml
--- a/fastq_dump.xml	Sat Jun 29 16:14:32 2013 -0400
+++ b/fastq_dump.xml	Sun Jun 30 11:12:31 2013 -0400
@@ -4,7 +4,7 @@
     #if $input.input_select=="file"
         fastq-dump --log-level fatal --accession '${input.sra.name}' --stdout $split $aligned $input.file > $output 
     #else
-        fastq-dump --log-level fatal --accession $input.accession --stdout $split $aligned $input.accession > $output 
+        fastq-dump --log-level fatal $input.accession > $output 
     #end if
   </command>
   <version_string>fastq-dump --version</version_string>