Mercurial > repos > matt-shirley > sra_tools
changeset 40:f1b83804013f draft
add option to take plaintext file with accession on one line
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Mon, 05 Aug 2013 09:40:26 -0400 |
| parents | 1d152e8cb375 |
| children | e64912394751 |
| files | sam_dump.xml |
| diffstat | 1 files changed, 9 insertions(+), 3 deletions(-) [+] |
line wrap: on
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--- a/sam_dump.xml Mon Aug 05 08:09:27 2013 -0400 +++ b/sam_dump.xml Mon Aug 05 09:40:26 2013 -0400 @@ -30,8 +30,10 @@ #end if #if $input.input_select == "file": $input.file - #else: + #elif $input.input_select == "accession_number": $input.accession + #elif $input.input_select == "text": + $input.text #end if > $output </command> @@ -41,12 +43,16 @@ <param name="input_select" type="select" label="select input type"> <option value="accession_number">SRR accession</option> <option value="file">SRA archive in current history</option> + <option value="text">text file containing SRR accession</option> </param> <when value="file"> - <param format="sra" name="file" type="data" label="sra archive"/> + <param format="sra" name="file" type="data" label="sra archive"/> </when> <when value="accession_number"> - <param format="text" name="accession" type="text" label="accession"/> + <param format="text" name="accession" type="text" label="accession"/> + </when> + <when value="text"> + <param format="txt" name="text" type="txt" label="text file"/> </when> </conditional> <param format="text" name="region" type="text" label="aligned region"/>