Mercurial > repos > matt-shirley > sra_tools

changeset 33:9ad900168ded draft

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typo in input conditional
author Matt Shirley <mdshw5@gmail.com>
date Sun, 30 Jun 2013 16:18:09 -0400
parents a7d8d22f9ad2
children 7803126704c6
files fastq_dump.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_dump.xml	Sun Jun 30 11:27:51 2013 -0400
+++ b/fastq_dump.xml	Sun Jun 30 16:18:09 2013 -0400
@@ -2,7 +2,7 @@
   <description> format reads from NCBI sra.</description>
   <command>
     #if $input.input_select=="file"
-        fastq-dump --log-level fatal --accession '${input.sra.name}' --stdout $split $aligned $input.file > $output 
+        fastq-dump --log-level fatal --accession '${input.file.name}' --stdout $split $aligned $input.file > $output 
     #else
         fastq-dump --log-level fatal $input.accession > $output 
     #end if