# HG changeset patch # User Matt Shirley # Date 1372623489 14400 # Node ID 9ad900168ded71134e19fdd90fe603c445d17cae # Parent a7d8d22f9ad221f7f6ae60508e5ceb4172c8f811 typo in input conditional diff -r a7d8d22f9ad2 -r 9ad900168ded fastq_dump.xml --- a/fastq_dump.xml Sun Jun 30 11:27:51 2013 -0400 +++ b/fastq_dump.xml Sun Jun 30 16:18:09 2013 -0400 @@ -2,7 +2,7 @@ format reads from NCBI sra. #if $input.input_select=="file" - fastq-dump --log-level fatal --accession '${input.sra.name}' --stdout $split $aligned $input.file > $output + fastq-dump --log-level fatal --accession '${input.file.name}' --stdout $split $aligned $input.file > $output #else fastq-dump --log-level fatal $input.accession > $output #end if