Mercurial > repos > matt-shirley > sra_tools
changeset 28:996add6daf36 draft
debug prefetch caching and accession input for fastq_dump
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Sat, 29 Jun 2013 15:53:14 -0400 |
| parents | 2295c666e6ce |
| children | d5f7232e67d9 |
| files | fastq_dump.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/fastq_dump.xml Sat Jun 29 15:49:44 2013 -0400 +++ b/fastq_dump.xml Sat Jun 29 15:53:14 2013 -0400 @@ -2,7 +2,7 @@ <description> format reads from NCBI sra.</description> <command> #if $input.input_select=="file" - fastq-dump --log-level fatal --accession '${input.sra.name}' --stdout $split $aligned $input.sra > $output + fastq-dump --log-level fatal --accession '${input.sra.name}' --stdout $split $aligned $input.file > $output #else fastq-dump --log-level fatal --accession $input.accession --stdout $split $aligned $input.accession > $output #end if @@ -15,10 +15,10 @@ <option value="file">SRA archive in current history</option> </param> <when value="file"> - <param format="sra" name="input" type="data" label="sra archive"/> + <param format="sra" name="file" type="data" label="sra archive"/> </when> <when value="accession_number"> - <param format="text" name="input" type="text" label="accession"/> + <param format="text" name="accession" type="text" label="accession"/> </when> </conditional> <param format="text" name="split" type="select" value="">