Mercurial > repos > matt-shirley > sra_tools
changeset 45:3cb113532930 draft
sea pileup accept text input
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Mon, 05 Aug 2013 12:54:03 -0400 |
| parents | 2c4599d594a5 |
| children | 88a13a2fd23f |
| files | sra_pileup.xml |
| diffstat | 1 files changed, 9 insertions(+), 3 deletions(-) [+] |
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--- a/sra_pileup.xml Mon Aug 05 11:43:37 2013 -0400 +++ b/sra_pileup.xml Mon Aug 05 12:54:03 2013 -0400 @@ -9,8 +9,10 @@ #end if #if $input.input_select == "file": $input.file - #else: + #elif $input.input_select == "accession_number": $input.accession + #elif $input.input_select == "text": + `cat $input.text` #end if > $output</command> <version_string>sra-pileup --version</version_string> @@ -19,12 +21,16 @@ <param name="input_select" type="select" label="select input type"> <option value="accession_number">SRR accession</option> <option value="file">SRA archive in current history</option> + <option value="text">text file containing SRR accession</option> </param> <when value="file"> - <param format="sra" name="file" type="data" label="sra archive"/> + <param format="sra" name="file" type="data" label="sra archive"/> </when> <when value="accession_number"> - <param format="text" name="accession" type="text" label="accession"/> + <param format="text" name="accession" type="text" label="accession"/> + </when> + <when value="text"> + <param format="txt" name="text" type="data" label="text file"/> </when> </conditional> <param format="text" name="region" type="text" label="aligned region"/>