log

age author description
Thu, 19 Oct 2017 10:05:54 -0400 jjohnson Uploaded draft default tip
Wed, 18 Oct 2017 16:55:57 -0400 jjohnson Uploaded draft
Mon, 04 Jan 2016 15:55:00 -0500 jjohnson Uploaded draft
Tue, 29 Dec 2015 13:01:46 -0600 Jim Johnson Change version ro 1.6.1.2
Tue, 29 Dec 2015 12:19:44 -0600 Jim Johnson Add R dependencies to deFuse
Fri, 18 Dec 2015 14:37:33 -0600 Jim Johnson Add GRCh38 hg38, minor fixes.
Wed, 06 May 2015 14:31:57 -0500 Jim Johnson Provide a matched tabular output
Thu, 12 Feb 2015 06:54:38 -0600 Jim Johnson Fix defuse_trinity_analysis.py
Wed, 11 Feb 2015 08:24:09 -0600 Jim Johnson Update tool_dependencies.xml
Tue, 10 Feb 2015 19:55:02 -0600 Jim Johnson Update tool_dependencies.xml
Tue, 10 Feb 2015 19:35:52 -0600 Jim Johnson Add defuse_trinity_analysis
Mon, 13 Oct 2014 15:42:10 -0500 Jim Johnson Change for extra_files_path
Tue, 15 Oct 2013 17:02:23 -0500 Jim Johnson Update tool_dependencies, add help
Fri, 06 Sep 2013 08:20:41 -0500 Jim Johnson Change requirement for samtools to version 0.1.19 to pick version which misc and bcftools
Fri, 06 Sep 2013 08:13:22 -0500 Jim Johnson Fix formatting error in defuse_results_to_vcf.py
Tue, 03 Sep 2013 10:59:43 -0500 Jim Johnson Change tool_dependencies.xml to use package_defuse_0_6_1
Tue, 03 Sep 2013 07:02:54 -0500 Jim Johnson Change boost dependendency to iuc versioni in action as well
Tue, 03 Sep 2013 06:51:37 -0500 Jim Johnson Change boost dependendency to iuc version
Tue, 03 Sep 2013 06:41:19 -0500 Jim Johnson Add breakpoints.bam output derived from breakpoints.genome.psl
Wed, 14 Aug 2013 16:44:18 -0500 Jim Johnson Add more info fields to defuse_results_to_vcf.py
Fri, 09 Aug 2013 11:36:24 -0500 Jim Johnson Fix metadata_source in defuse_results_to_vcf.xml
Fri, 09 Aug 2013 11:19:26 -0500 Jim Johnson Define defuse.results.tsv ext as subclass of tabular, add defuse_results_to_vcf to generate vcf form DeFuse results
Wed, 07 Aug 2013 12:00:42 -0500 Jim Johnson Fix typo in data_manager_conf.xml
Wed, 07 Aug 2013 11:54:05 -0500 Jim Johnson defuse.xml fix unigene_fasta path to use ncbi_prefix
Thu, 27 Jun 2013 13:11:50 -0500 Jim Johnson Update datamanager and defuse.xml config file generation
Mon, 24 Jun 2013 08:12:05 -0500 Jim Johnson Move tool-data/defuse.loc.sample to tool-data/defuse_reference.loc.sample
Mon, 24 Jun 2013 07:01:48 -0500 Jim Johnson Change tool data table to defuse_reference
Fri, 21 Jun 2013 14:46:11 -0500 Jim Johnson Add datamanager, move to defuse_reference.loc
Sat, 15 Jun 2013 14:36:47 -0500 Jim Johnson Update create_reference_dataset for non human genome builds
Wed, 12 Jun 2013 21:03:18 -0500 Jim Johnson Move stdio tags in defuse_bamfastq.xml
Wed, 12 Jun 2013 16:21:59 -0500 Jim Johnson Add PATH env for tools
Wed, 12 Jun 2013 15:41:12 -0500 landsj add defuse_bamfastq
Mon, 10 Jun 2013 05:43:53 -0500 Jim Johnson Add stdio tag to create_reference_dataset.xml
Sun, 09 Jun 2013 21:21:03 -0500 Jim Johnson Correct tool_id create_reference_dataset.xml
Sun, 09 Jun 2013 20:30:21 -0500 Jim Johnson Add create_reference_dataset.xml
Fri, 07 Jun 2013 20:52:19 -0500 Jim Johnson update dependencies
Thu, 06 Jun 2013 07:36:16 -0500 Jim Johnson Change dependency for kent (blat faToTwoBit) to latest since versions not available at UCSC
Wed, 05 Jun 2013 15:52:32 -0500 Jim Johnson Fix toolshed location in tool_dependencies.xml
Wed, 05 Jun 2013 15:37:57 -0500 Jim Johnson Update to DeFuse verion 0.6.1 and change tool dependencies for autoinstall
Fri, 18 Jan 2013 14:56:40 -0600 Jim Johnson Add gmap_setup_bin and gmap_index_directory to defuse.xml config file generation
Mon, 07 Jan 2013 12:44:55 -0600 Jim Johnson Defuse version 0.6.0
Mon, 07 Jan 2013 12:20:39 -0600 Jim Johnson Edit labels and help.
Fri, 04 Jan 2013 14:59:03 -0600 Jim Johnson Add dependecies for bowtie, blat, and faToTwoBit
Fri, 04 Jan 2013 13:24:17 -0600 Jim Johnson Make get_reads option the default
Fri, 04 Jan 2013 13:11:04 -0600 Jim Johnson Fix faToTwoBit name
Fri, 04 Jan 2013 13:07:16 -0600 Jim Johnson Fix sed options
Fri, 04 Jan 2013 11:53:33 -0500 jjohnson Uploaded