Mercurial > repos > jjohnson > defuse
changeset 42:bfb65cebe229
Add R dependencies to deFuse
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 29 Dec 2015 12:19:44 -0600 |
| parents | 74de1ccc51db |
| children | 42130a76af28 |
| files | defuse.xml tool_dependencies.xml |
| diffstat | 2 files changed, 8 insertions(+), 0 deletions(-) [+] |
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--- a/defuse.xml Fri Dec 18 14:37:33 2015 -0600 +++ b/defuse.xml Tue Dec 29 12:19:44 2015 -0600 @@ -6,6 +6,8 @@ <requirement type="package" version="1.0.0">bowtie</requirement> <requirement type="package" version="2013-05-09">gmap</requirement> <requirement type="package" version="latest">kent</requirement> + <requirement type="package" version="3.1.2">R</requirement> + <requirement type="package" version="2.0.3">ada</requirement> </requirements> <command interpreter="command"> /bin/bash $shscript </command> <inputs>
--- a/tool_dependencies.xml Fri Dec 18 14:37:33 2015 -0600 +++ b/tool_dependencies.xml Tue Dec 29 12:19:44 2015 -0600 @@ -15,4 +15,10 @@ <package name="kent" version="latest"> <repository name="package_kent" owner="jjohnson" changeset_revision="822c8d19cfe3" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> + <package name="R" version="3.1.2"> + <repository name="package_r_3_1_2" owner="iuc" changeset_revision="68077fb03d75" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="ada" version="2.0.3"> + <repository name="package_r_ada_2_0_3" owner="jjohnson" changeset_revision="50f0e0825d41" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> </tool_dependency>