Mercurial > repos > jjohnson > defuse
changeset 10:08e9244aeab8
Change dependency for kent (blat faToTwoBit) to latest since versions not available at UCSC
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 06 Jun 2013 07:36:16 -0500 |
| parents | d9017e11cde5 |
| children | 19c48803a377 |
| files | defuse.xml repository_dependencies.xml tool_dependencies.xml |
| diffstat | 3 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/defuse.xml Wed Jun 05 15:52:32 2013 -0500 +++ b/defuse.xml Thu Jun 06 07:36:16 2013 -0500 @@ -5,7 +5,7 @@ <requirement type="package" version="0.1.18">samtools</requirement> <requirement type="package" version="1.0.0">bowtie</requirement> <requirement type="package" version="2013-05-09">gmap</requirement> - <requirement type="package" version="283">kent</requirement> + <requirement type="package" version="latest">kent</requirement> </requirements> <command interpreter="command"> /bin/bash $shscript </command> <inputs>
--- a/repository_dependencies.xml Wed Jun 05 15:52:32 2013 -0500 +++ b/repository_dependencies.xml Thu Jun 06 07:36:16 2013 -0500 @@ -3,5 +3,5 @@ <repository changeset_revision="5f7ec5048224" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> <repository changeset_revision="e682af6a72cd" name="package_bowtie_1_0_0" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> <repository changeset_revision="03bb09b717ae" name="package_gmap_2013_05_09" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> - <repository changeset_revision="d4c8accb9a57" name="package_kent_283" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </repositories>
--- a/tool_dependencies.xml Wed Jun 05 15:52:32 2013 -0500 +++ b/tool_dependencies.xml Thu Jun 06 07:36:16 2013 -0500 @@ -12,8 +12,8 @@ <package name="gmap" version="2013-05-09"> <repository changeset_revision="03bb09b717ae" name="package_gmap_2013_05_09" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="kent" version="283"> - <repository changeset_revision="d4c8accb9a57" name="package_kent_283" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <package name="kent" version="latest"> + <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="defuse" version="0.6.1"> <install version="1.0">