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changeset 17:fc35b7b993b1

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Move stdio tags in defuse_bamfastq.xml
author Jim Johnson <jj@umn.edu>
date Wed, 12 Jun 2013 21:03:18 -0500
parents 3df516ce3ad6
children 547d8db4673e
files defuse_bamfastq.xml
diffstat 1 files changed, 4 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/defuse_bamfastq.xml	Wed Jun 12 16:21:59 2013 -0500
+++ b/defuse_bamfastq.xml	Wed Jun 12 21:03:18 2013 -0500
@@ -33,14 +33,11 @@
     <param name="pair" type="boolean" truevalue="-p" falsevalue="" checked="true" label="Name contains pair info as /1 /2."/>
     <param name="multiple" type="boolean" truevalue="-m" falsevalue="" checked="true" label="Bam contains multiple mappings per read."/>
     <param name="rename" type="boolean" truevalue="-r" falsevalue="" checked="true" label="Rename with integer IDs."/>
-    
-    
+  </inputs>
 
-    <stdio>
-      <exit_code range="1:" level="fatal" description="Error" />
-    </stdio>
-
-  </inputs>
+  <stdio>
+    <exit_code range="1:" level="fatal" description="Error" />
+  </stdio>
 
   <outputs>
     <data format="fastqsanger,fastqillumina" name="fastq1" label="fastq1"  />
@@ -55,7 +52,6 @@
       <param name="rename" value="True" />
       <output name="fastq1" file="testout_defuse1.fq" />
       <output name="fastq2" file="testout_defuse2.fq" />
-      
     </test>
   </tests>