Mercurial > repos > dchristiany > data_manager_proteore
annotate data_manager_conf.xml @ 12:60cb0a5ae661 draft
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
author | dchristiany |
---|---|
date | Tue, 23 Oct 2018 08:18:32 -0400 |
parents | 2f153b41b6fe |
children | a1530507fee4 |
rev | line source |
---|---|
2
1f1fb404255a
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
1
diff
changeset
|
1 <?xml version="1.0"?> |
0
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
2 <data_managers> |
1
c60497a290e8
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
0
diff
changeset
|
3 <data_manager tool_file="data_manager/resource_building.xml" id="resource_building"> |
12
60cb0a5ae661
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
10
diff
changeset
|
4 <data_table name="proteore_protein_atlas"> |
0
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
5 <output> |
10
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
6 <column name="id"/> |
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
7 <column name="name" /> |
0
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
8 <column name="value" /> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
9 <column name="path" output_ref="output" > |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
10 <move type="file"> |
10
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> |
0
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
12 </move> |
10
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation> |
0
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
14 <value_translation type="function">abspath</value_translation> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
15 </column> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
16 </output> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
17 </data_table> |
12
60cb0a5ae661
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
10
diff
changeset
|
18 <data_table name="proteore_peptide_atlas"> |
0
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
19 <output> |
10
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
20 <column name="id"/> |
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
21 <column name="name" /> |
0
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
22 <column name="tissue" /> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
23 <column name="value" output_ref="output" > |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
24 <move type="file"> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
25 <!--source>${path}/${value}.tsv</source--> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
27 </move> |
10
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation> |
0
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
29 <value_translation type="function">abspath</value_translation> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
30 </column> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
31 </output> |
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
32 </data_table> |
12
60cb0a5ae661
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
10
diff
changeset
|
33 <data_table name="proteore_id_mapping"> |
4
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
34 <output> |
10
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
35 <column name="id" /> |
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
36 <column name="name" /> |
4
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
37 <column name="value" /> |
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
38 <column name="path" output_ref="output" > |
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
39 <move type="file"> |
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
40 <!--source>${path}</source--> |
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
41 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> |
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
42 </move> |
10
2f153b41b6fe
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
dchristiany
parents:
8
diff
changeset
|
43 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> |
4
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
44 <value_translation type="function">abspath</value_translation> |
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
45 </column> |
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
46 </output> |
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
47 </data_table> |
0
2de84fea8367
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
diff
changeset
|
48 </data_manager> |
4
ab5a054b90a2
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
dchristiany
parents:
2
diff
changeset
|
49 </data_managers> |