Mercurial > repos > dchristiany > data_manager_proteore

changeset 4:ab5a054b90a2 draft

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planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
author dchristiany
date Fri, 19 Oct 2018 04:01:43 -0400
parents c4ac72465a95
children 1dc87bb457c7
files data_manager/resource_building.xml data_manager_conf.xml tool_data_table_conf.xml.sample
diffstat 3 files changed, 16 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/resource_building.xml	Fri Oct 19 03:52:55 2018 -0400
+++ b/data_manager/resource_building.xml	Fri Oct 19 04:01:43 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="0.2" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="0.3" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>
--- a/data_manager_conf.xml	Fri Oct 19 03:52:55 2018 -0400
+++ b/data_manager_conf.xml	Fri Oct 19 04:01:43 2018 -0400
@@ -28,5 +28,19 @@
                 </column>
             </output>
         </data_table>
+        <data_table name="id_mapping_tab">
+            <output>
+                <column name="value" />
+                <column name="name" />
+                <column name="path" output_ref="output" >
+                    <move type="file">
+                        <!--source>${path}</source-->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${value}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
     </data_manager>
-</data_managers>
\ No newline at end of file
+</data_managers>
--- a/tool_data_table_conf.xml.sample	Fri Oct 19 03:52:55 2018 -0400
+++ b/tool_data_table_conf.xml.sample	Fri Oct 19 04:01:43 2018 -0400
@@ -8,8 +8,4 @@
       <columns>name, value, path</columns>
       <file path="tool-data/proteinatlas.loc" />
     </table>
-    <table name="id_mapping_tab" comment_char="#">
-      <columns>name, value, path</columns>
-      <file path="tool-data/id_mapping.loc" />
-    </table>
 </tables>
\ No newline at end of file