comparison data_manager_conf.xml @ 12:60cb0a5ae661 draft

planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty

11:4bb219eee10f

<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
        <data_table name="protein_atlas">
            <output>
                <column name="id"/>
                <column name="name" />
                <column name="value" />
                <column name="path" output_ref="output" >

                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="peptide_atlas">
            <output>
                <column name="id"/>
                <column name="name" />
                <column name="tissue" />
                <column name="value" output_ref="output" >

                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="id_mapping">
            <output>
                <column name="id" />
                <column name="name" />
                <column name="value" />
                <column name="path" output_ref="output" >

12:60cb0a5ae661

<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
        <data_table name="proteore_protein_atlas">
            <output>
                <column name="id"/>
                <column name="name" />
                <column name="value" />
                <column name="path" output_ref="output" >

                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="proteore_peptide_atlas">
            <output>
                <column name="id"/>
                <column name="name" />
                <column name="tissue" />
                <column name="value" output_ref="output" >

                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="proteore_id_mapping">
            <output>
                <column name="id" />
                <column name="name" />
                <column name="value" />
                <column name="path" output_ref="output" >