Mercurial > repos > dchristiany > data_manager_proteore
view data_manager_conf.xml @ 52:a34897a85cda draft default tip
planemo upload commit 12b0b3e18cd7af9a8588906fa2ec199b9d2a770f-dirty
author | dchristiany |
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date | Fri, 01 Mar 2019 09:59:08 -0500 |
parents | 8f6ddad93e9f |
children |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/resource_building.xml" id="resource_building"> <data_table name="proteore_protein_atlas"> <output> <column name="id"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_peptide_atlas"> <output> <column name="id"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}/${value}.tsv</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_id_mapping"> <output> <column name="id" /> <column name="name" /> <column name="value" /> <column name="path" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_biogrid_dictionaries"> <output> <column name="id" /> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_bioplex_dictionaries"> <output> <column name="id" /> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_humap_dictionaries"> <output> <column name="id" /> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> </data_managers>