Mercurial > repos > dchristiany > data_manager_proteore

view data_manager_conf.xml @ 12:60cb0a5ae661 draft

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planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
author dchristiany
date Tue, 23 Oct 2018 08:18:32 -0400
parents 2f153b41b6fe
children a1530507fee4
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
        <data_table name="proteore_protein_atlas">
            <output>
                <column name="id"/>
                <column name="name" />
                <column name="value" />
                <column name="path" output_ref="output" >
                    <move type="file">
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="proteore_peptide_atlas">
            <output>
                <column name="id"/>
                <column name="name" />
                <column name="tissue" />
                <column name="value" output_ref="output" >
                    <move type="file">
                        <!--source>${path}/${value}.tsv</source-->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="proteore_id_mapping">
            <output>
                <column name="id" />
                <column name="name" />
                <column name="value" />
                <column name="path" output_ref="output" >
                    <move type="file">
                        <!--source>${path}</source-->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>