Mercurial > repos > dchristiany > data_manager_proteore

diff data_manager_conf.xml @ 10:2f153b41b6fe draft

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planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
author dchristiany
date Tue, 23 Oct 2018 07:43:37 -0400
parents 1c5a49b120b6
children 60cb0a5ae661
line wrap: on
line diff
--- a/data_manager_conf.xml	Fri Oct 19 05:42:11 2018 -0400
+++ b/data_manager_conf.xml	Tue Oct 23 07:43:37 2018 -0400
@@ -3,41 +3,44 @@
     <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
         <data_table name="protein_atlas">
             <output>
+                <column name="id"/>
+                <column name="name" />
                 <column name="value" />
-                <column name="name" />
                 <column name="path" output_ref="output" >
                     <move type="file">
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/${path}</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${path}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>
         </data_table>
         <data_table name="peptide_atlas">
             <output>
+                <column name="id"/>
+                <column name="name" />
                 <column name="tissue" />
-                <column name="name" />
                 <column name="value" output_ref="output" >
                     <move type="file">
                         <!--source>${path}/${value}.tsv</source-->
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${tissue}.tsv</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>
         </data_table>
         <data_table name="id_mapping">
             <output>
+                <column name="id" />
+                <column name="name" />
                 <column name="value" />
-                <column name="name" />
                 <column name="path" output_ref="output" >
                     <move type="file">
                         <!--source>${path}</source-->
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${value}.tsv</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>