Mercurial > repos > dchristiany > data_manager_proteore

comparison data_manager_conf.xml @ 10:2f153b41b6fe draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty
author dchristiany
date Tue, 23 Oct 2018 07:43:37 -0400
parents 1c5a49b120b6
children 60cb0a5ae661
comparison
equal deleted inserted replaced
9:6c47b77d89d6 10:2f153b41b6fe
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/resource_building.xml" id="resource_building"> 3 <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
4 <data_table name="protein_atlas"> 4 <data_table name="protein_atlas">
5 <output> 5 <output>
6 <column name="id"/>
7 <column name="name" />
6 <column name="value" /> 8 <column name="value" />
7 <column name="name" />
8 <column name="path" output_ref="output" > 9 <column name="path" output_ref="output" >
9 <move type="file"> 10 <move type="file">
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/${path}</target> 11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
11 </move> 12 </move>
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${path}</value_translation> 13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
13 <value_translation type="function">abspath</value_translation> 14 <value_translation type="function">abspath</value_translation>
14 </column> 15 </column>
15 </output> 16 </output>
16 </data_table> 17 </data_table>
17 <data_table name="peptide_atlas"> 18 <data_table name="peptide_atlas">
18 <output> 19 <output>
20 <column name="id"/>
21 <column name="name" />
19 <column name="tissue" /> 22 <column name="tissue" />
20 <column name="name" />
21 <column name="value" output_ref="output" > 23 <column name="value" output_ref="output" >
22 <move type="file"> 24 <move type="file">
23 <!--source>${path}/${value}.tsv</source--> 25 <!--source>${path}/${value}.tsv</source-->
24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target> 26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
25 </move> 27 </move>
26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${tissue}.tsv</value_translation> 28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
27 <value_translation type="function">abspath</value_translation> 29 <value_translation type="function">abspath</value_translation>
28 </column> 30 </column>
29 </output> 31 </output>
30 </data_table> 32 </data_table>
31 <data_table name="id_mapping"> 33 <data_table name="id_mapping">
32 <output> 34 <output>
35 <column name="id" />
36 <column name="name" />
33 <column name="value" /> 37 <column name="value" />
34 <column name="name" />
35 <column name="path" output_ref="output" > 38 <column name="path" output_ref="output" >
36 <move type="file"> 39 <move type="file">
37 <!--source>${path}</source--> 40 <!--source>${path}</source-->
38 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> 41 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
39 </move> 42 </move>
40 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${value}.tsv</value_translation> 43 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
41 <value_translation type="function">abspath</value_translation> 44 <value_translation type="function">abspath</value_translation>
42 </column> 45 </column>
43 </output> 46 </output>
44 </data_table> 47 </data_table>
45 </data_manager> 48 </data_manager>