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annotate tool_dependencies.xml @ 7:8180f6b0249b

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Upgrade to SHEAR version 0.2.4
author Jim Johnson <jj@umn.edu>
date Tue, 22 Oct 2013 08:20:52 -0500
parents aaaa5a071ff0
children 2620f7984418
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="samtools" version="0.1.18">
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4 <repository changeset_revision="5f7ec5048224" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="bwa" version="0.6.2">
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7 <repository changeset_revision="8be5fbfc1548" name="package_bwa_0_6_2" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="kent" version="latest">
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10 <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="cap3" version="3">
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13 <repository changeset_revision="a472ccd208e2" name="package_cap3_3" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="crest" version="1.0.1">
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16 <repository changeset_revision="89a9d6ce7f96" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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17 <readme>
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18 CREST requires:
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19 Bioperl package Bio::DB:Sam
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20 blat - requires license for commercial use
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21 cap3 - requires license for commercial use
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22 </readme>
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23 </package>
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24 <package name="shear" version="0.2.4">
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25 <repository changeset_revision="d6a7b8497a7b" name="package_shear_0_2_4" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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26 </package>
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28 </tool_dependency>