Mercurial > repos > jjohnson > shear

comparison tool_dependencies.xml @ 7:8180f6b0249b

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Upgrade to SHEAR version 0.2.4
author Jim Johnson <jj@umn.edu>
date Tue, 22 Oct 2013 08:20:52 -0500
parents aaaa5a071ff0
children 2620f7984418
comparison
equal deleted inserted replaced
6:0158f7356ffd 7:8180f6b0249b
7 <repository changeset_revision="8be5fbfc1548" name="package_bwa_0_6_2" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="8be5fbfc1548" name="package_bwa_0_6_2" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="kent" version="latest"> 9 <package name="kent" version="latest">
10 <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="cap3" version="3">
13 <repository changeset_revision="a472ccd208e2" name="package_cap3_3" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
14 </package>
12 <package name="crest" version="1.0.1"> 15 <package name="crest" version="1.0.1">
13 <repository changeset_revision="89a9d6ce7f96" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="89a9d6ce7f96" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
14 <readme> 17 <readme>
15 CREST requires: 18 CREST requires:
16 Bioperl package Bio::DB:Sam 19 Bioperl package Bio::DB:Sam
17 cap3 which only has binary executable downloads from: http://seq.cs.iastate.edu/cap3.html 20 blat - requires license for commercial use
21 cap3 - requires license for commercial use
18 </readme> 22 </readme>
19 </package> 23 </package>
20 <package name="shear" version="0.2.3"> 24 <package name="shear" version="0.2.4">
21 <repository changeset_revision="8bcf811b9c1e" name="package_shear_0_2_3" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 25 <repository changeset_revision="d6a7b8497a7b" name="package_shear_0_2_4" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
22 </package> 26 </package>
23 27
24 </tool_dependency> 28 </tool_dependency>