diff tool_dependencies.xml @ 7:8180f6b0249b

Upgrade to SHEAR version 0.2.4

--- a/tool_dependencies.xml	Mon Oct 21 08:54:58 2013 -0500
+++ b/tool_dependencies.xml	Tue Oct 22 08:20:52 2013 -0500
@@ -9,16 +9,20 @@
     <package name="kent" version="latest">
         <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="cap3" version="3">
+        <repository changeset_revision="a472ccd208e2" name="package_cap3_3" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="crest" version="1.0.1">
         <repository changeset_revision="89a9d6ce7f96" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
           <readme>
 CREST requires: 
   Bioperl package Bio::DB:Sam  
-  cap3 which only has binary executable downloads from:   http://seq.cs.iastate.edu/cap3.html
+  blat - requires license for commercial use
+  cap3 - requires license for commercial use
           </readme>
     </package>
-    <package name="shear" version="0.2.3">
-        <repository changeset_revision="8bcf811b9c1e" name="package_shear_0_2_3" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    <package name="shear" version="0.2.4">
+        <repository changeset_revision="d6a7b8497a7b" name="package_shear_0_2_4" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
 
 </tool_dependency>