|
4
|
1 <tool id="breakdancer" name="breakdancer" version="1.2.6">
|
|
6
|
2 <requirements>
|
|
9
|
3 <requirement type="package" version="1.2.6">breakdancer</requirement>
|
|
6
|
4 </requirements>
|
|
|
5
|
|
4
|
6 <description></description>
|
|
6
|
7
|
|
4
|
8 <parallelism method="basic"></parallelism>
|
|
6
|
9
|
|
|
10 <command interpreter="python">
|
|
4
|
11 breakdancer.py
|
|
|
12 -i1 $input
|
|
|
13 -o1 $output_raw
|
|
|
14 -o2 $output_vcf
|
|
|
15 </command>
|
|
|
16
|
|
6
|
17
|
|
4
|
18
|
|
|
19 <inputs>
|
|
|
20 <param format="bam" name="input" type="data" help="" label="bam file" />
|
|
|
21 </inputs>
|
|
|
22
|
|
|
23 <outputs>
|
|
|
24 <data name="output_raw" format="tabular" label="breakdancer raw" />
|
|
|
25 <data name="output_vcf" format="vcf" label="breakdancer vcf" />
|
|
|
26 </outputs>
|
|
|
27 <help>
|
|
|
28
|
|
|
29 </help>
|
|
|
30 </tool> |
