Mercurial > repos > jeremie > breakdancer_test

changeset 4:73d0ce5316f0 draft

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Uploaded
author jeremie
date Fri, 27 Jun 2014 04:24:35 -0400
parents edf957aa29b8
children 490363104b25
files breakdancer.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/breakdancer.xml	Fri Jun 27 04:24:35 2014 -0400
@@ -0,0 +1,26 @@
+<tool id="breakdancer" name="breakdancer" version="1.2.6">
+	<description></description>
+	<parallelism method="basic"></parallelism>
+		<command interpreter="python">
+			breakdancer.py
+			-i1 $input
+			-o1 $output_raw
+			-o2 $output_vcf
+	</command>
+
+ <!--  <requirements>
+		<requirement type="package">breakdancer-max</requirement>
+	</requirements> -->
+
+	<inputs>
+		<param format="bam" name="input" type="data" help=""  label="bam file" />
+	</inputs>
+
+	<outputs>
+		<data name="output_raw" format="tabular" label="breakdancer raw" />
+		<data name="output_vcf" format="vcf" label="breakdancer vcf" />
+	</outputs>
+	<help>
+
+	</help>
+</tool>
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