Mercurial > repos > jeremie > breakdancer_test
changeset 5:490363104b25 draft
Uploaded
| author | jeremie |
|---|---|
| date | Fri, 27 Jun 2014 04:27:52 -0400 |
| parents | 73d0ce5316f0 |
| children | d36991c26cdd |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 39 insertions(+), 3 deletions(-) [+] |
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--- a/tool_dependencies.xml Fri Jun 27 04:24:35 2014 -0400 +++ b/tool_dependencies.xml Fri Jun 27 04:27:52 2014 -0400 @@ -1,7 +1,43 @@ <?xml version="1.0"?> <tool_dependency> - <package name="breakdancer" version="1.2.6"> - <repository changeset_revision="caa1e0052ea6" name="package_breakdancer_1_2_6" owner="jeremie" toolshed="http://testtoolshed.g2.bx.psu.edu" /> - </package> + <package name="breakdancer-max" version="1.2.6"> + <install version="1.0"> + <actions> + <action type="download_binary" target_directory="bin"> + <url_template os="linux">https://www.dropbox.com/s/uu6i5m6ri32ogo9/breakdancer-max?dl=1</url_template> + </action> + + <action type="download_binary" target_directory="bin"> + <url_template os="linux">https://www.dropbox.com/s/owg7s479fyq8zps/bam2cfg.pl?dl=1</url_template> + </action> + <action type="download_binary" target_directory="bin"> + <url_template os="linux">https://www.dropbox.com/s/4yj96h4srk0uaf7/breakdancer2vcf.py?dl=1</url_template> + </action> + <action type="move_file"> + <source>$INSTALL_DIR/bin/breakdancer-max?dl=1</source> + <destination>$INSTALL_DIR/bin/breakdancer-max</destination> + </action> + <action type="move_file"> + <source>$INSTALL_DIR/bin/bam2cfg.pl?dl=1</source> + <destination>$INSTALL_DIR/bin/bam2cfg.pl</destination> + </action> + <action type="move_file"> + <source>$INSTALL_DIR/bin/breakdancer2vcf.py?dl=1</source> + <destination>$INSTALL_DIR/bin/breakdancer2vcf.py</destination> + </action> + <action type="chmod"> + <file mode="750">$INSTALL_DIR/bin/*</file> + </action> + <!-- <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer-max $INSTALL_DIR/bin</action> + <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/bam2cfg.pl $INSTALL_DIR/bin</action> + <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer2vcf.py $INSTALL_DIR/bin</action> --> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + </readme> + </package> </tool_dependency>