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1 <tool id="breakdancer" name="breakdancer" version="1.2.6">
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2 <description></description>
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3 <parallelism method="basic"></parallelism>
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4 <command interpreter="python">
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5 breakdancer.py
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6 -i1 $input
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7 -o1 $output_raw
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8 -o2 $output_vcf
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9 </command>
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10
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11 <!-- <requirements>
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12 <requirement type="package">breakdancer-max</requirement>
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13 </requirements> -->
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14
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15 <inputs>
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16 <param format="bam" name="input" type="data" help="" label="bam file" />
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17 </inputs>
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18
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19 <outputs>
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20 <data name="output_raw" format="tabular" label="breakdancer raw" />
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21 <data name="output_vcf" format="vcf" label="breakdancer vcf" />
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22 </outputs>
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23 <help>
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24
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25 </help>
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26 </tool> |
