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author jeremie
date Fri, 27 Jun 2014 04:36:57 -0400
parents 73d0ce5316f0
children 5c3ba387e329
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<tool id="breakdancer" name="breakdancer" version="1.2.6">
	<requirements>
		<requirement type="package">package_breakdancer_1_2_6</requirement>
	</requirements>

	<description></description>

	<parallelism method="basic"></parallelism>

	<command interpreter="python">
			breakdancer.py
			-i1 $input
			-o1 $output_raw
			-o2 $output_vcf
	</command>

	

	<inputs>
		<param format="bam" name="input" type="data" help=""  label="bam file" />
	</inputs>

	<outputs>
		<data name="output_raw" format="tabular" label="breakdancer raw" />
		<data name="output_vcf" format="vcf" label="breakdancer vcf" />
	</outputs>
	<help>

	</help>
</tool>