Mercurial > repos > jeremie > breakdancer_test

view breakdancer.xml @ 9:5c3ba387e329 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jeremie
date Fri, 27 Jun 2014 04:56:29 -0400
parents d36991c26cdd
children b122ca66efc7
line wrap: on
line source

<tool id="breakdancer" name="breakdancer" version="1.2.6">
	<requirements>
		<requirement type="package" version="1.2.6">breakdancer</requirement>
	</requirements>

	<description></description>

	<parallelism method="basic"></parallelism>

	<command interpreter="python">
			breakdancer.py
			-i1 $input
			-o1 $output_raw
			-o2 $output_vcf
	</command>

	

	<inputs>
		<param format="bam" name="input" type="data" help=""  label="bam file" />
	</inputs>

	<outputs>
		<data name="output_raw" format="tabular" label="breakdancer raw" />
		<data name="output_vcf" format="vcf" label="breakdancer vcf" />
	</outputs>
	<help>

	</help>
</tool>