Mercurial > repos > ggricourt > data_manager_bigg

annotate data_manager/bigg_model_sbml_fetcher.xml @ 5:5e6f76507721 draft

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"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 47caed1dd87e80ae226fabb584e9d63d7c86a436-dirty"
author ggricourt
date Thu, 24 Feb 2022 10:56:46 +0000
parents a15b229ee755
children
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1 <tool id="model_sbml_fetcher" name="Bigg SBML data manager" tool_type="manage_data" profile="18.09" version="0.0.1">
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2 <description>Get an SBML model (BiGG)</description>
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3 <requirements>
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4 <requirement type="package" version="3.7">python</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 python '$__tool_directory__/bigg_model_sbml_fetcher.py'
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8 #if $model_cond.model_select == "auto"
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9 --model-all
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10 #else
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11 --model-id '$model_cond.model_id'
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12 #end if
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13 --out-file '$out_file'
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14 ]]></command>
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15 <inputs>
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16 <conditional name="model_cond">
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17 <param name="model_select" type="select" label="Select a reference dataset your history or use a built-in?">
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18 <option value="auto">Download all models</option>
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19 <option value="manual">Manual install</option>
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20 </param>
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21 <when value="manual">
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22 <param name="model_id" type="text" label="BIGG id model" value="">
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23 <validator type="empty_field" message="BIGG model ID is required"/>
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24 </param>
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25 </when>
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26 </conditional>
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27 </inputs>
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28 <outputs>
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29 <data name="out_file" format="data_manager_json" />
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30 </outputs>
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31 <tests>
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32 <test>
1
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33 <param name="model_id" value="e_coli_core"/>
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34 <output name="out_file" file="e_coli_core.json"/>
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35 </test>
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36 </tests>
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37 <help><![CDATA[
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38 Pick SBML Model
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39 =================
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40
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41 Download the selected SBML model fromg BiGG database.
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42
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43
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44 Version
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45 ----------
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46 0.0.1
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47
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48 License
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49 -------
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50
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51 `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_
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52
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53 ]]></help>
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54 </tool>