view data_manager/bigg_model_sbml_fetcher.xml @ 5:5e6f76507721 draft

"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 47caed1dd87e80ae226fabb584e9d63d7c86a436-dirty"

<tool id="model_sbml_fetcher" name="Bigg SBML data manager" tool_type="manage_data" profile="18.09" version="0.0.1">
    <description>Get an SBML model (BiGG)</description>
    <requirements>
        <requirement type="package" version="3.7">python</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        python '$__tool_directory__/bigg_model_sbml_fetcher.py'
            #if $model_cond.model_select == "auto"
                --model-all
            #else
                --model-id '$model_cond.model_id'
            #end if
            --out-file '$out_file'
    ]]></command>
    <inputs>
        <conditional name="model_cond">
            <param name="model_select" type="select" label="Select a reference dataset your history or use a built-in?">
                <option value="auto">Download all models</option>
                <option value="manual">Manual install</option>
            </param>
            <when value="manual">
                <param name="model_id" type="text" label="BIGG id model" value="">
                    <validator type="empty_field" message="BIGG model ID is required"/>
                </param>
            </when>
        </conditional>
    </inputs>
    <outputs>
        <data name="out_file" format="data_manager_json" />
    </outputs>
    <tests>
        <test>
            <param name="model_id" value="e_coli_core"/>
            <output name="out_file" file="e_coli_core.json"/>
        </test>
    </tests>
    <help><![CDATA[
Pick SBML Model
=================

Download the selected SBML model fromg BiGG database.


Version
----------
0.0.1

License
-------

`MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_

    ]]></help>
</tool>