Mercurial > repos > ggricourt > data_manager_bigg
comparison data_manager/bigg_model_sbml_fetcher.xml @ 5:5e6f76507721 draft
"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 47caed1dd87e80ae226fabb584e9d63d7c86a436-dirty"
| author | ggricourt |
|---|---|
| date | Thu, 24 Feb 2022 10:56:46 +0000 |
| parents | a15b229ee755 |
| children |
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| 4:a15b229ee755 | 5:5e6f76507721 |
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| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.7">python</requirement> | 4 <requirement type="package" version="3.7">python</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 7 python '$__tool_directory__/bigg_model_sbml_fetcher.py' | 7 python '$__tool_directory__/bigg_model_sbml_fetcher.py' |
| 8 --model-id '$model_id' | 8 #if $model_cond.model_select == "auto" |
| 9 --out-file '$out_file' | 9 --model-all |
| 10 #else | |
| 11 --model-id '$model_cond.model_id' | |
| 12 #end if | |
| 13 --out-file '$out_file' | |
| 10 ]]></command> | 14 ]]></command> |
| 11 <inputs> | 15 <inputs> |
| 12 <param name="model_id" type="select" label="Model Id"> | 16 <conditional name="model_cond"> |
| 13 <option value="iML1515">Escherichia coli str. K-12 substr. MG1655 (iML1515)</option> | 17 <param name="model_select" type="select" label="Select a reference dataset your history or use a built-in?"> |
| 14 <option value="iYO844">Bacillus subtilis subsp. subtilis str. 168 (iYO844)</option> | 18 <option value="auto">Download all models</option> |
| 15 </param> | 19 <option value="manual">Manual install</option> |
| 20 </param> | |
| 21 <when value="manual"> | |
| 22 <param name="model_id" type="text" label="BIGG id model" value=""> | |
| 23 <validator type="empty_field" message="BIGG model ID is required"/> | |
| 24 </param> | |
| 25 </when> | |
| 26 </conditional> | |
| 16 </inputs> | 27 </inputs> |
| 17 <outputs> | 28 <outputs> |
| 18 <data name="out_file" format="data_manager_json" /> | 29 <data name="out_file" format="data_manager_json" /> |
| 19 </outputs> | 30 </outputs> |
| 20 <tests> | 31 <tests> |