diff data_manager/bigg_model_sbml_fetcher.xml @ 5:5e6f76507721 draft

"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 47caed1dd87e80ae226fabb584e9d63d7c86a436-dirty"

--- a/data_manager/bigg_model_sbml_fetcher.xml	Thu Feb 24 09:30:37 2022 +0000
+++ b/data_manager/bigg_model_sbml_fetcher.xml	Thu Feb 24 10:56:46 2022 +0000
@@ -5,14 +5,25 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         python '$__tool_directory__/bigg_model_sbml_fetcher.py'
-        --model-id '$model_id'
-        --out-file '$out_file'
+            #if $model_cond.model_select == "auto"
+                --model-all
+            #else
+                --model-id '$model_cond.model_id'
+            #end if
+            --out-file '$out_file'
     ]]></command>
     <inputs>
-        <param name="model_id" type="select" label="Model Id">
-            <option value="iML1515">Escherichia coli str. K-12 substr. MG1655 (iML1515)</option>
-            <option value="iYO844">Bacillus subtilis subsp. subtilis str. 168 (iYO844)</option>
-        </param>
+        <conditional name="model_cond">
+            <param name="model_select" type="select" label="Select a reference dataset your history or use a built-in?">
+                <option value="auto">Download all models</option>
+                <option value="manual">Manual install</option>
+            </param>
+            <when value="manual">
+                <param name="model_id" type="text" label="BIGG id model" value="">
+                    <validator type="empty_field" message="BIGG model ID is required"/>
+                </param>
+            </when>
+        </conditional>
     </inputs>
     <outputs>
         <data name="out_file" format="data_manager_json" />