Mercurial > repos > ggricourt > data_manager_bigg

annotate data_manager/bigg_model_sbml_fetcher.xml @ 4:a15b229ee755 draft

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"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 47caed1dd87e80ae226fabb584e9d63d7c86a436-dirty"
author ggricourt
date Thu, 24 Feb 2022 09:30:37 +0000
parents 5068c6484606
children 5e6f76507721
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262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
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1 <tool id="model_sbml_fetcher" name="Bigg SBML data manager" tool_type="manage_data" profile="18.09" version="0.0.1">
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2 <description>Get an SBML model (BiGG)</description>
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3 <requirements>
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4 <requirement type="package" version="3.7">python</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 python '$__tool_directory__/bigg_model_sbml_fetcher.py'
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8 --model-id '$model_id'
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9 --out-file '$out_file'
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10 ]]></command>
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11 <inputs>
1
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12 <param name="model_id" type="select" label="Model Id">
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13 <option value="iML1515">Escherichia coli str. K-12 substr. MG1655 (iML1515)</option>
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14 <option value="iYO844">Bacillus subtilis subsp. subtilis str. 168 (iYO844)</option>
1
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15 </param>
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16 </inputs>
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17 <outputs>
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18 <data name="out_file" format="data_manager_json" />
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19 </outputs>
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20 <tests>
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21 <test>
1
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22 <param name="model_id" value="e_coli_core"/>
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23 <output name="out_file" file="e_coli_core.json"/>
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24 </test>
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25 </tests>
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26 <help><![CDATA[
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27 Pick SBML Model
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28 =================
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29
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30 Download the selected SBML model fromg BiGG database.
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31
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32
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33 Version
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34 ----------
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35 0.0.1
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36
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37 License
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38 -------
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39
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40 `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_
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41
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42 ]]></help>
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43 </tool>