Mercurial > repos > dchristiany > data_manager_proteore

annotate data_manager_conf.xml @ 33:cdeffb3670c3 draft

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author dchristiany
date Mon, 28 Jan 2019 08:44:47 -0500
parents 83f57ba70416
children 80fc0b28e227
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1 <?xml version="1.0"?>
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2 <data_managers>
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3 <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
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4 <data_table name="proteore_protein_atlas">
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5 <output>
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6 <column name="id"/>
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7 <column name="name" />
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8 <column name="value" />
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9 <column name="path" output_ref="output" >
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10 <move type="file">
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11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
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12 </move>
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13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
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14 <value_translation type="function">abspath</value_translation>
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15 </column>
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16 </output>
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17 </data_table>
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18 <data_table name="proteore_peptide_atlas">
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19 <output>
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20 <column name="id"/>
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21 <column name="name" />
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22 <column name="tissue" />
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23 <column name="value" output_ref="output" >
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24 <move type="file">
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25 <!--source>${path}/${value}.tsv</source-->
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26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
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27 </move>
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28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
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29 <value_translation type="function">abspath</value_translation>
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30 </column>
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31 </output>
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32 </data_table>
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33 <data_table name="proteore_id_mapping">
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34 <output>
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35 <column name="id" />
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36 <column name="name" />
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37 <column name="value" />
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38 <column name="path" output_ref="output" >
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39 <move type="file">
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40 <!--source>${path}</source-->
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41 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
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42 </move>
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43 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
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44 <value_translation type="function">abspath</value_translation>
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45 </column>
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46 </output>
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47 </data_table>
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48 <data_table name="proteore_biogrid_dictionaries">
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49 <output>
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50 <column name="id" />
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51 <column name="name" />
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52 <column name="value" />
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53 <column name="path" output_ref="output" >
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54 <move type="file">
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55 <!--source>${path}</source-->
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56 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
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57 </move>
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58 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
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59 <value_translation type="function">abspath</value_translation>
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60 </column>
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61 </output>
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62 </data_table>
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63 <data_table name="proteore_bioplex_dictionaries">
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64 <output>
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65 <column name="id" />
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66 <column name="name" />
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67 <column name="value" />
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68 <column name="path" output_ref="output" >
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69 <move type="file">
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70 <!--source>${path}</source-->
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71 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
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72 </move>
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73 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
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74 <value_translation type="function">abspath</value_translation>
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75 </column>
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76 </output>
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77 </data_table>
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78 </data_manager>
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79 </data_managers>