Mercurial > repos > dchristiany > data_manager_proteore

diff data_manager_conf.xml @ 15:83f57ba70416 draft

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planemo upload commit 8040003119a3d54866ec6ee9b9f659f2af554817-dirty
author dchristiany
date Tue, 15 Jan 2019 04:29:28 -0500
parents f8ed6fc5f3ae
children 80fc0b28e227
line wrap: on
line diff
--- a/data_manager_conf.xml	Fri Jan 04 06:11:49 2019 -0500
+++ b/data_manager_conf.xml	Tue Jan 15 04:29:28 2019 -0500
@@ -30,7 +30,22 @@
                 </column>
             </output>
         </data_table>
-        <data_table name="proteore_id_mapping_dictionaries">
+        <data_table name="proteore_id_mapping">
+            <output>
+                <column name="id" />
+                <column name="name" />
+                <column name="value" />
+                <column name="path" output_ref="output" >
+                    <move type="file">
+                        <!--source>${path}</source-->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+        <data_table name="proteore_biogrid_dictionaries">
             <output>
                 <column name="id" />
                 <column name="name" />
@@ -38,9 +53,24 @@
                 <column name="path" output_ref="output" >
                     <move type="file">
                         <!--source>${path}</source-->
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping_dictionaries/</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping_dictionaries/${id}.pickle</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+        <data_table name="proteore_bioplex_dictionaries">
+            <output>
+                <column name="id" />
+                <column name="name" />
+                <column name="value" />
+                <column name="path" output_ref="output" >
+                    <move type="file">
+                        <!--source>${path}</source-->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>