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annotate msp_split.xml @ 3:a91e186cf294 draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit a598583947118bd50cfe5ae12d955c20d6e502a6
author tomnl
date Tue, 17 Jul 2018 12:27:53 -0400
parents aa55ff1d76d4
children f2683ec717fe
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1 <tool id="msp_split" name="msp_split" version="0.0.1">
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2 <description>Slit MSP file into n number of files</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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7 <stdio>
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8 <exit_code range="1:" />
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9 </stdio>
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10 <command interpreter="python"><![CDATA[ msp_split.py -i $in_msp -o 'spec_out' -n $n ]]></command>
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12 <inputs>
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13 <param name="in_msp" type="data" label="Input MSP file" format="txt,msp" help='MSP file (must have NAME: as the first element in each spectra entry'/>
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14 <param name="n" type="integer" label="Number of new files" value="2"
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15 help="Number of new MSP files to split the original MSP file into"/>
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17 </inputs>
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18 <outputs>
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19 <collection name="multiple" type="list" label="${tool.name} on ${on_string}: multi msp files">
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20 <discover_datasets pattern="__designation_and_ext__" ext='msp' directory="spec_out" format='msp' />
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21 </collection>
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22 </outputs>
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23 <tests>
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24 <test>
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25 <param name="in_msp" value="input.msp"/>
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26 <output_collection name="multiple" type="list">
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27 <element name="file1" file="file01.msp" ftype="msp"/>
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28 <element name="file2" file="file02.msp" ftype="msp"/>
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29 </output_collection>
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30 </test>
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32 </tests>
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33 <help><![CDATA[
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34 =============================================================
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35 msp split
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36 =============================================================
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37 Split a MSP file into n MSP files. Where the the spectra will be divided between n files.
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39 ]]></help>
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41 <expand macro="citations" />
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43 </tool>