view msp_split.xml @ 0:aa55ff1d76d4 draft

planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15

<tool id="msp_split" name="msp_split" version="0.0.1">
    <description>Slit MSP file into n number of files</description>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command interpreter="python"><![CDATA[  msp_split.py -i $in_msp -o 'spec_out' -n $n  ]]></command>

    <inputs>
        <param name="in_msp" type="data" label="Input MSP file" format="txt,msp" help='MSP file (must have NAME: as the first element in each spectra entry'/>
        <param name="n" type="integer" label="Number of new files" value="2"
                    help="Number of new MSP files to split the original MSP file into"/>

    </inputs>
    <outputs>
       <collection name="multiple" type="list" label="${tool.name} on ${on_string}: multi msp files">
            <discover_datasets pattern="__designation_and_ext__" ext='msp' directory="spec_out" />
       </collection>
    </outputs>
    <tests>

    </tests>
    <help><![CDATA[


    ]]></help>
</tool>