view msp_split.xml @ 3:a91e186cf294 draft

planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit a598583947118bd50cfe5ae12d955c20d6e502a6

<tool id="msp_split" name="msp_split" version="0.0.1">
    <description>Slit MSP file into n number of files</description>
    <macros>
        <import>macros.xml</import>
    </macros>
        
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command interpreter="python"><![CDATA[  msp_split.py -i $in_msp -o 'spec_out' -n $n  ]]></command>

    <inputs>
        <param name="in_msp" type="data" label="Input MSP file" format="txt,msp" help='MSP file (must have NAME: as the first element in each spectra entry'/>
        <param name="n" type="integer" label="Number of new files" value="2"
                    help="Number of new MSP files to split the original MSP file into"/>

    </inputs>
    <outputs>
       <collection name="multiple" type="list" label="${tool.name} on ${on_string}: multi msp files">
            <discover_datasets pattern="__designation_and_ext__" ext='msp' directory="spec_out" format='msp' />
       </collection>
    </outputs>
    <tests>
       <test>
            <param name="in_msp" value="input.msp"/>
            <output_collection name="multiple" type="list">
                <element name="file1" file="file01.msp" ftype="msp"/>
                <element name="file2" file="file02.msp" ftype="msp"/>
            </output_collection>
      </test>

    </tests>
    <help><![CDATA[
=============================================================
msp split
=============================================================
Split a MSP file into n MSP files. Where the the spectra will be divided between n files.

    ]]></help>
    
<expand macro="citations" />
    
</tool>