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annotate msp_split.xml @ 0:aa55ff1d76d4 draft

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planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
author tomnl
date Thu, 10 May 2018 07:20:04 -0400
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aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
tomnl
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1 <tool id="msp_split" name="msp_split" version="0.0.1">
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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2 <description>Slit MSP file into n number of files</description>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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3 <stdio>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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4 <exit_code range="1:" />
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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5 </stdio>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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6 <command interpreter="python"><![CDATA[ msp_split.py -i $in_msp -o 'spec_out' -n $n ]]></command>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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8 <inputs>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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9 <param name="in_msp" type="data" label="Input MSP file" format="txt,msp" help='MSP file (must have NAME: as the first element in each spectra entry'/>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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10 <param name="n" type="integer" label="Number of new files" value="2"
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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11 help="Number of new MSP files to split the original MSP file into"/>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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13 </inputs>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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14 <outputs>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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15 <collection name="multiple" type="list" label="${tool.name} on ${on_string}: multi msp files">
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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16 <discover_datasets pattern="__designation_and_ext__" ext='msp' directory="spec_out" />
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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17 </collection>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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18 </outputs>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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19 <tests>
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aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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21 </tests>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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22 <help><![CDATA[
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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25 ]]></help>
aa55ff1d76d4 planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit dcfc95273101a7ef0405c2efb8d83f5d456ccd15
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26 </tool>