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view test-data/haplotypes.fasta @ 0:598c3e720567 draft default tip

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planemo upload commit 4a2876135fca2f46ffa6451e463eb167a0b51b65
author stephenshank
date Thu, 21 Mar 2019 12:47:00 -0400
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>haplotype-1_freq-0.470965
CCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAATAAAGGTAGGAGGGCAACTAAAG
GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTACCAGGG
AAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAG
CAGGTAAATATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACA
CCTGTCAACATAATTGGAAGGAATCTGTTGACTCAACTTGGCTGCACTCTAAATTTTCCC
ATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTG
AAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAATGGAAATTTGTACAGAGATG
GAGAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTT
GCCATCAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
AAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAA
AAGAAAAACTCAGTAACAGTACTGGATGTGGGTGATGCGTATTTTTCAGTTCCCTTAGAT
AAAGACTTTAGAAAATATACTGCATTTACCATACCTAGCTTAAACAATGAGACACCAGGG
ATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTTCAA
TGTAGCATGACAAAAATCTTGGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTAT
CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAA
ATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAT
CAGAAAGAGCCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTA
CAGCCTATAGTGCTGCCAGAGAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTA
GGAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAATAAAGCAATTATGTAAA
CTCCTTAGGGGAGCCAAAGGACTAACAGAAGTAGTACCACTCACAGTGGAAGCAGAGTTA
GAATTGGCAGAAAACAGGGAGATTTTAAGAGAACCAGTACATGGAGTGTATTATGATCCA
TCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCTAG
>haplotype-2_freq-0.432536
CCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAG
GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGA
AGATGGAGACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGAT
CAGATACCCATAGAAATCTGTGGGCATAAGGCTATAGGTACAGTATTAGTAGGGCCTACA
CCTGTCAATATAATTGGAAGAAATTTGTTGACTCAGATTGGCTGCACTTTAAATTTTCCC
ATTAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTT
AAACAATGGCCACTGACAGAGGAAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATG
GAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTT
GCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
AAGAAAACTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCCGCTGGGTTAAAA
AAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATACTTTTCAGTTCCCTTATAT
GAAGAATTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGA
ATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAA
AGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAGATAGTTATCTAT
CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGTCAGCATAGAACAAAA
ATAGAAGAGCTGAGAAAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAC
CAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCAGATAAATGGACAGTA
CAGCCTATAGTGCTGCCAGAAAAGGACAGCTGGACTGTCAATGACATACAGAAGTTAGTG
GGAAAACTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTGTGTAAA
CTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTT
GAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCA
TCAAAAGACTTGATAGCAGAAATACAGAAACAGGGACTAG
>haplotype-3_freq-0.073014
CCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAG
GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGA
AGATGGAGACCAAAAATGATAGTGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGAT
CAGATACCCATAGAAATCTGTGGGCATAAGGCTATAGGTACAGTATTAGTAGGGCCTACA
CCTGTCAATATAATTGGAAGAAATTTGTTGACTCAGATTGGCTGCACTTTAAATTTTCCC
ATTAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTT
AAACAATGGCCACTGACAGAGGAAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATG
GAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAGTACTCCAATATTT
GCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
AAGAAAACTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCCGCTGGGTTAAAA
AAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATACTTTTCAGTTCCCTTATAT
GAAGAATTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGA
ATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAA
AGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAGATAGTTATCTAT
CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGTCAGCATAGAACAAAA
ATAGAAGAGCTGAGAAAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAC
CAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCAGATAAATGGACAGTA
CAGCCTATAGTGCTGCCAGAAAAGGACAGCTGGACTGTCAATGACATACAGAAGTTAGTG
GGAAAACTGAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAGCAATTGTGTAAA
CTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTT
GAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCA
TCAAAAGACTTGATAGCAGAAATACAGAAACAGGGACTAG
>haplotype-4_freq-0.023484
CCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAATAAAGGTAGGAGGGCAACTAAAG
GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTACCAGGG
AAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAG
CAGGTAAATATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACA
CCTGTCAACATAATTGGAAGGAATCTGTTGACTCAACTTGGCTGCACTCTAAATTTTCCC
ATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTG
AAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAATGGAAATTTGTACAGAGATG
GAGAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTT
GCCATCAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
AAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAA
AAGAAAAACTCAGTAACAGTACTGGATGTGGGTGATGCGTATTTTTCAGTTCCCTTAGAT
AAAGACTTTAGAAAATATACTGCATTTACCATACCTAGCTTAAACAATGAGACACCAGGG
ATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTTCAA
TGTAGCATGACAAAAATCTTGGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTAT
CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAA
ATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAT
CAGAAAGAGCCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTA
CAGCCTATAGTGCTGCCAGAGAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTA
GGAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAATAAAGCAATTATGTAAA
CTCCTTAGGGGAGCCAAAGGACTAACAGAAGTAGTACCACTCACAGTGGAAGCAGAGTTA
GAATTGGCAGAAAACAGGGAGATTTTAAGAGAACCGGTACATGGAGTGTATTATGATCCA
TCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCTAG