Mercurial > repos > stephenshank > abayesqr

annotate test-data/haplotypes.fasta @ 0:598c3e720567 draft default tip

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planemo upload commit 4a2876135fca2f46ffa6451e463eb167a0b51b65
author stephenshank
date Thu, 21 Mar 2019 12:47:00 -0400
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598c3e720567 planemo upload commit 4a2876135fca2f46ffa6451e463eb167a0b51b65
stephenshank
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1 >haplotype-1_freq-0.470965
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2 CCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAATAAAGGTAGGAGGGCAACTAAAG
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3 GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTACCAGGG
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4 AAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAG
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5 CAGGTAAATATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACA
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6 CCTGTCAACATAATTGGAAGGAATCTGTTGACTCAACTTGGCTGCACTCTAAATTTTCCC
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7 ATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTG
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8 AAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAATGGAAATTTGTACAGAGATG
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9 GAGAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTT
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10 GCCATCAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
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11 AAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAA
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12 AAGAAAAACTCAGTAACAGTACTGGATGTGGGTGATGCGTATTTTTCAGTTCCCTTAGAT
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13 AAAGACTTTAGAAAATATACTGCATTTACCATACCTAGCTTAAACAATGAGACACCAGGG
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14 ATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTTCAA
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15 TGTAGCATGACAAAAATCTTGGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTAT
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16 CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAA
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17 ATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAT
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18 CAGAAAGAGCCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTA
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19 CAGCCTATAGTGCTGCCAGAGAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTA
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20 GGAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAATAAAGCAATTATGTAAA
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21 CTCCTTAGGGGAGCCAAAGGACTAACAGAAGTAGTACCACTCACAGTGGAAGCAGAGTTA
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22 GAATTGGCAGAAAACAGGGAGATTTTAAGAGAACCAGTACATGGAGTGTATTATGATCCA
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23 TCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCTAG
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24 >haplotype-2_freq-0.432536
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25 CCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAG
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26 GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGA
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27 AGATGGAGACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGAT
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28 CAGATACCCATAGAAATCTGTGGGCATAAGGCTATAGGTACAGTATTAGTAGGGCCTACA
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29 CCTGTCAATATAATTGGAAGAAATTTGTTGACTCAGATTGGCTGCACTTTAAATTTTCCC
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30 ATTAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTT
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31 AAACAATGGCCACTGACAGAGGAAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATG
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32 GAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTT
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33 GCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
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34 AAGAAAACTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCCGCTGGGTTAAAA
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35 AAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATACTTTTCAGTTCCCTTATAT
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36 GAAGAATTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGA
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37 ATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAA
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38 AGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAGATAGTTATCTAT
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39 CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGTCAGCATAGAACAAAA
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40 ATAGAAGAGCTGAGAAAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAC
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41 CAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCAGATAAATGGACAGTA
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42 CAGCCTATAGTGCTGCCAGAAAAGGACAGCTGGACTGTCAATGACATACAGAAGTTAGTG
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43 GGAAAACTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTGTGTAAA
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44 CTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTT
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45 GAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCA
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46 TCAAAAGACTTGATAGCAGAAATACAGAAACAGGGACTAG
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47 >haplotype-3_freq-0.073014
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48 CCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAG
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49 GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGA
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50 AGATGGAGACCAAAAATGATAGTGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGAT
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51 CAGATACCCATAGAAATCTGTGGGCATAAGGCTATAGGTACAGTATTAGTAGGGCCTACA
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52 CCTGTCAATATAATTGGAAGAAATTTGTTGACTCAGATTGGCTGCACTTTAAATTTTCCC
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53 ATTAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTT
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54 AAACAATGGCCACTGACAGAGGAAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATG
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55 GAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAGTACTCCAATATTT
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56 GCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
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57 AAGAAAACTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCCGCTGGGTTAAAA
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58 AAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATACTTTTCAGTTCCCTTATAT
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59 GAAGAATTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGA
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60 ATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAA
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61 AGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAGATAGTTATCTAT
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62 CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGTCAGCATAGAACAAAA
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63 ATAGAAGAGCTGAGAAAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAC
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64 CAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCAGATAAATGGACAGTA
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65 CAGCCTATAGTGCTGCCAGAAAAGGACAGCTGGACTGTCAATGACATACAGAAGTTAGTG
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66 GGAAAACTGAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAGCAATTGTGTAAA
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67 CTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTT
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68 GAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCA
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69 TCAAAAGACTTGATAGCAGAAATACAGAAACAGGGACTAG
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70 >haplotype-4_freq-0.023484
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71 CCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAATAAAGGTAGGAGGGCAACTAAAG
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72 GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTACCAGGG
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73 AAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAG
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74 CAGGTAAATATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACA
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75 CCTGTCAACATAATTGGAAGGAATCTGTTGACTCAACTTGGCTGCACTCTAAATTTTCCC
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76 ATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTG
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77 AAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAATGGAAATTTGTACAGAGATG
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78 GAGAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTT
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79 GCCATCAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
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80 AAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAA
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81 AAGAAAAACTCAGTAACAGTACTGGATGTGGGTGATGCGTATTTTTCAGTTCCCTTAGAT
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82 AAAGACTTTAGAAAATATACTGCATTTACCATACCTAGCTTAAACAATGAGACACCAGGG
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83 ATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTTCAA
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84 TGTAGCATGACAAAAATCTTGGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTAT
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85 CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAA
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86 ATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAT
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87 CAGAAAGAGCCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTA
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88 CAGCCTATAGTGCTGCCAGAGAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTA
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89 GGAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAATAAAGCAATTATGTAAA
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90 CTCCTTAGGGGAGCCAAAGGACTAACAGAAGTAGTACCACTCACAGTGGAAGCAGAGTTA
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91 GAATTGGCAGAAAACAGGGAGATTTTAAGAGAACCGGTACATGGAGTGTATTATGATCCA
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92 TCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCTAG