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diff test-data/haplotypes.fasta @ 0:598c3e720567 draft default tip

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planemo upload commit 4a2876135fca2f46ffa6451e463eb167a0b51b65
author stephenshank
date Thu, 21 Mar 2019 12:47:00 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/haplotypes.fasta	Thu Mar 21 12:47:00 2019 -0400
@@ -0,0 +1,92 @@
+>haplotype-1_freq-0.470965
+CCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAATAAAGGTAGGAGGGCAACTAAAG
+GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTACCAGGG
+AAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAG
+CAGGTAAATATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACA
+CCTGTCAACATAATTGGAAGGAATCTGTTGACTCAACTTGGCTGCACTCTAAATTTTCCC
+ATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTG
+AAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAATGGAAATTTGTACAGAGATG
+GAGAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTT
+GCCATCAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
+AAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAA
+AAGAAAAACTCAGTAACAGTACTGGATGTGGGTGATGCGTATTTTTCAGTTCCCTTAGAT
+AAAGACTTTAGAAAATATACTGCATTTACCATACCTAGCTTAAACAATGAGACACCAGGG
+ATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTTCAA
+TGTAGCATGACAAAAATCTTGGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTAT
+CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAA
+ATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAT
+CAGAAAGAGCCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTA
+CAGCCTATAGTGCTGCCAGAGAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTA
+GGAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAATAAAGCAATTATGTAAA
+CTCCTTAGGGGAGCCAAAGGACTAACAGAAGTAGTACCACTCACAGTGGAAGCAGAGTTA
+GAATTGGCAGAAAACAGGGAGATTTTAAGAGAACCAGTACATGGAGTGTATTATGATCCA
+TCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCTAG
+>haplotype-2_freq-0.432536
+CCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAG
+GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGA
+AGATGGAGACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGAT
+CAGATACCCATAGAAATCTGTGGGCATAAGGCTATAGGTACAGTATTAGTAGGGCCTACA
+CCTGTCAATATAATTGGAAGAAATTTGTTGACTCAGATTGGCTGCACTTTAAATTTTCCC
+ATTAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTT
+AAACAATGGCCACTGACAGAGGAAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATG
+GAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTT
+GCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
+AAGAAAACTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCCGCTGGGTTAAAA
+AAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATACTTTTCAGTTCCCTTATAT
+GAAGAATTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGA
+ATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAA
+AGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAGATAGTTATCTAT
+CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGTCAGCATAGAACAAAA
+ATAGAAGAGCTGAGAAAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAC
+CAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCAGATAAATGGACAGTA
+CAGCCTATAGTGCTGCCAGAAAAGGACAGCTGGACTGTCAATGACATACAGAAGTTAGTG
+GGAAAACTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTGTGTAAA
+CTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTT
+GAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCA
+TCAAAAGACTTGATAGCAGAAATACAGAAACAGGGACTAG
+>haplotype-3_freq-0.073014
+CCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAG
+GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGA
+AGATGGAGACCAAAAATGATAGTGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGAT
+CAGATACCCATAGAAATCTGTGGGCATAAGGCTATAGGTACAGTATTAGTAGGGCCTACA
+CCTGTCAATATAATTGGAAGAAATTTGTTGACTCAGATTGGCTGCACTTTAAATTTTCCC
+ATTAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTT
+AAACAATGGCCACTGACAGAGGAAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATG
+GAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAGTACTCCAATATTT
+GCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
+AAGAAAACTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCCGCTGGGTTAAAA
+AAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATACTTTTCAGTTCCCTTATAT
+GAAGAATTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGA
+ATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAA
+AGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAGATAGTTATCTAT
+CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGTCAGCATAGAACAAAA
+ATAGAAGAGCTGAGAAAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAC
+CAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCAGATAAATGGACAGTA
+CAGCCTATAGTGCTGCCAGAAAAGGACAGCTGGACTGTCAATGACATACAGAAGTTAGTG
+GGAAAACTGAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAGCAATTGTGTAAA
+CTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTT
+GAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCA
+TCAAAAGACTTGATAGCAGAAATACAGAAACAGGGACTAG
+>haplotype-4_freq-0.023484
+CCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAATAAAGGTAGGAGGGCAACTAAAG
+GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTACCAGGG
+AAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAG
+CAGGTAAATATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACA
+CCTGTCAACATAATTGGAAGGAATCTGTTGACTCAACTTGGCTGCACTCTAAATTTTCCC
+ATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTG
+AAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAATGGAAATTTGTACAGAGATG
+GAGAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTT
+GCCATCAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
+AAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAA
+AAGAAAAACTCAGTAACAGTACTGGATGTGGGTGATGCGTATTTTTCAGTTCCCTTAGAT
+AAAGACTTTAGAAAATATACTGCATTTACCATACCTAGCTTAAACAATGAGACACCAGGG
+ATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTTCAA
+TGTAGCATGACAAAAATCTTGGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTAT
+CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAA
+ATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAT
+CAGAAAGAGCCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTA
+CAGCCTATAGTGCTGCCAGAGAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTA
+GGAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAATAAAGCAATTATGTAAA
+CTCCTTAGGGGAGCCAAAGGACTAACAGAAGTAGTACCACTCACAGTGGAAGCAGAGTTA
+GAATTGGCAGAAAACAGGGAGATTTTAAGAGAACCGGTACATGGAGTGTATTATGATCCA
+TCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCTAG