Mercurial > repos > stephenshank > abayesqr

comparison test-data/haplotypes.fasta @ 0:598c3e720567 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 4a2876135fca2f46ffa6451e463eb167a0b51b65
author stephenshank
date Thu, 21 Mar 2019 12:47:00 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:598c3e720567
1 >haplotype-1_freq-0.470965
2 CCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAATAAAGGTAGGAGGGCAACTAAAG
3 GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTACCAGGG
4 AAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAG
5 CAGGTAAATATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACA
6 CCTGTCAACATAATTGGAAGGAATCTGTTGACTCAACTTGGCTGCACTCTAAATTTTCCC
7 ATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTG
8 AAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAATGGAAATTTGTACAGAGATG
9 GAGAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTT
10 GCCATCAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
11 AAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAA
12 AAGAAAAACTCAGTAACAGTACTGGATGTGGGTGATGCGTATTTTTCAGTTCCCTTAGAT
13 AAAGACTTTAGAAAATATACTGCATTTACCATACCTAGCTTAAACAATGAGACACCAGGG
14 ATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTTCAA
15 TGTAGCATGACAAAAATCTTGGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTAT
16 CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAA
17 ATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAT
18 CAGAAAGAGCCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTA
19 CAGCCTATAGTGCTGCCAGAGAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTA
20 GGAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAATAAAGCAATTATGTAAA
21 CTCCTTAGGGGAGCCAAAGGACTAACAGAAGTAGTACCACTCACAGTGGAAGCAGAGTTA
22 GAATTGGCAGAAAACAGGGAGATTTTAAGAGAACCAGTACATGGAGTGTATTATGATCCA
23 TCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCTAG
24 >haplotype-2_freq-0.432536
25 CCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAG
26 GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGA
27 AGATGGAGACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGAT
28 CAGATACCCATAGAAATCTGTGGGCATAAGGCTATAGGTACAGTATTAGTAGGGCCTACA
29 CCTGTCAATATAATTGGAAGAAATTTGTTGACTCAGATTGGCTGCACTTTAAATTTTCCC
30 ATTAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTT
31 AAACAATGGCCACTGACAGAGGAAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATG
32 GAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTT
33 GCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
34 AAGAAAACTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCCGCTGGGTTAAAA
35 AAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATACTTTTCAGTTCCCTTATAT
36 GAAGAATTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGA
37 ATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAA
38 AGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAGATAGTTATCTAT
39 CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGTCAGCATAGAACAAAA
40 ATAGAAGAGCTGAGAAAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAC
41 CAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCAGATAAATGGACAGTA
42 CAGCCTATAGTGCTGCCAGAAAAGGACAGCTGGACTGTCAATGACATACAGAAGTTAGTG
43 GGAAAACTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTGTGTAAA
44 CTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTT
45 GAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCA
46 TCAAAAGACTTGATAGCAGAAATACAGAAACAGGGACTAG
47 >haplotype-3_freq-0.073014
48 CCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAG
49 GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGA
50 AGATGGAGACCAAAAATGATAGTGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGAT
51 CAGATACCCATAGAAATCTGTGGGCATAAGGCTATAGGTACAGTATTAGTAGGGCCTACA
52 CCTGTCAATATAATTGGAAGAAATTTGTTGACTCAGATTGGCTGCACTTTAAATTTTCCC
53 ATTAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTT
54 AAACAATGGCCACTGACAGAGGAAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATG
55 GAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAGTACTCCAATATTT
56 GCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
57 AAGAAAACTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCCGCTGGGTTAAAA
58 AAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATACTTTTCAGTTCCCTTATAT
59 GAAGAATTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGA
60 ATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAA
61 AGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAGATAGTTATCTAT
62 CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGTCAGCATAGAACAAAA
63 ATAGAAGAGCTGAGAAAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAC
64 CAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCAGATAAATGGACAGTA
65 CAGCCTATAGTGCTGCCAGAAAAGGACAGCTGGACTGTCAATGACATACAGAAGTTAGTG
66 GGAAAACTGAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAGCAATTGTGTAAA
67 CTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTT
68 GAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCA
69 TCAAAAGACTTGATAGCAGAAATACAGAAACAGGGACTAG
70 >haplotype-4_freq-0.023484
71 CCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAATAAAGGTAGGAGGGCAACTAAAG
72 GAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTACCAGGG
73 AAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAG
74 CAGGTAAATATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACA
75 CCTGTCAACATAATTGGAAGGAATCTGTTGACTCAACTTGGCTGCACTCTAAATTTTCCC
76 ATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTG
77 AAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAATGGAAATTTGTACAGAGATG
78 GAGAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTT
79 GCCATCAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAAT
80 AAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAA
81 AAGAAAAACTCAGTAACAGTACTGGATGTGGGTGATGCGTATTTTTCAGTTCCCTTAGAT
82 AAAGACTTTAGAAAATATACTGCATTTACCATACCTAGCTTAAACAATGAGACACCAGGG
83 ATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTTCAA
84 TGTAGCATGACAAAAATCTTGGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTAT
85 CAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAA
86 ATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGATTCACCACACCAGACAAAAAGCAT
87 CAGAAAGAGCCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTA
88 CAGCCTATAGTGCTGCCAGAGAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTA
89 GGAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAATAAAGCAATTATGTAAA
90 CTCCTTAGGGGAGCCAAAGGACTAACAGAAGTAGTACCACTCACAGTGGAAGCAGAGTTA
91 GAATTGGCAGAAAACAGGGAGATTTTAAGAGAACCGGTACATGGAGTGTATTATGATCCA
92 TCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCTAG