Mercurial > repos > sanbi-uwc > data_manager_fetch_refseq

annotate data_manager_conf.xml @ 19:d118e256faca draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 120c6491f4b0888220e432693a9805d8198d7397"
author sanbi-uwc
date Thu, 16 Apr 2020 10:19:57 +0000
parents 0347d4d8b436
children
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cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
diff changeset
1 <?xml version="1.0"?>
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
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2 <data_managers>
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d118e256faca "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 120c6491f4b0888220e432693a9805d8198d7397"
sanbi-uwc
parents: 17
diff changeset
3 <data_manager tool_file="data_manager/fetch_artic_primers.xml" id="fetch_artic_primers">
d118e256faca "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 120c6491f4b0888220e432693a9805d8198d7397"
sanbi-uwc
parents: 17
diff changeset
4 <data_table name="artic_primers">
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cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
diff changeset
5 <output>
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
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6 <column name="value" />
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d118e256faca "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 120c6491f4b0888220e432693a9805d8198d7397"
sanbi-uwc
parents: 17
diff changeset
7 <column name="description" />
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efe0f451c40f planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit b682adad2c3c74567d23e1a5cf2bfcc3df1c96ae-dirty
sanbi-uwc
parents: 0
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8 <column name="path" output_ref="output_file" >
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cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
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9 <move type="file">
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
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10 <source>${path}</source>
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d118e256faca "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 120c6491f4b0888220e432693a9805d8198d7397"
sanbi-uwc
parents: 17
diff changeset
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">artic_primers/#echo str($name).bed#</target>
0
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
diff changeset
12 </move>
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d118e256faca "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 120c6491f4b0888220e432693a9805d8198d7397"
sanbi-uwc
parents: 17
diff changeset
13 <value_translation>artic_primers/#echo str($name).bed#</value_translation>
0
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
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14 <value_translation type="function">abspath</value_translation>
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
diff changeset
15 </column>
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
diff changeset
16 </output>
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
diff changeset
17 </data_table>
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
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18 </data_manager>
cfe6cd521835 planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
sanbi-uwc
parents:
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19 </data_managers>