comparison data_manager_conf.xml @ 19:d118e256faca draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 120c6491f4b0888220e432693a9805d8198d7397"

18:75c1817c2ecf

<?xml version="1.0"?>
<data_managers>    
    <data_manager tool_file="data_manager/fetch_refseq.xml" id="fetch_genome_fetch_refseq">
        <data_table name="all_fasta">
            <output>
                <column name="value" />
                <column name="dbkey" />
                <column name="name" />
                <column name="path" output_ref="output_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</target>
                    </move>
                    <value_translation>refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>    

19:d118e256faca

<?xml version="1.0"?>
<data_managers>    
    <data_manager tool_file="data_manager/fetch_artic_primers.xml" id="fetch_artic_primers">
        <data_table name="artic_primers">
            <output>
                <column name="value" />
                <column name="description" />
                <column name="path" output_ref="output_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">artic_primers/#echo str($name).bed#</target>
                    </move>
                    <value_translation>artic_primers/#echo str($name).bed#</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>