Mercurial > repos > sanbi-uwc > data_manager_fetch_refseq

diff data_manager_conf.xml @ 0:cfe6cd521835 draft

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planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit cfd2aa18826b938402ccfc6003f1793886001202-dirty
author sanbi-uwc
date Fri, 07 Sep 2018 17:13:20 -0400
parents
children efe0f451c40f
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Fri Sep 07 17:13:20 2018 -0400
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<data_managers>    
+    <data_manager tool_file="data_manager/fetch_refseq.xml" id="fetch_genome_fetch_refseq">
+        <data_table name="all_fasta">
+            <output>
+                <column name="value" />
+                <column name="dbkey" />
+                <column name="name" />
+                <column name="path" output_ref="out_file" >
+                    <move type="file">
+                        <source>${path}</source>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/seq/${path}</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/seq/${path}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>    
+</data_managers>