changeset 10:982458013bdb draft

Uploaded v0.1.2b, fixed dependency definition

--- a/tools/blast_rbh/README.rst	Wed Jun 11 06:34:14 2014 -0400
+++ b/tools/blast_rbh/README.rst	Thu Jul 31 05:01:51 2014 -0400
@@ -49,9 +49,10 @@
 ======= ======================================================================
 Version Changes
 ------- ----------------------------------------------------------------------
-v0.1.0  - Initial public release, targetting NCBI BLAST+ 2.2.29
+v0.1.0  - Initial Test Tool Shed release, targetting NCBI BLAST+ 2.2.29
 v0.1.1  - Supports self-comparison, sometimes useful for spotting duplicates.
 v0.1.2  - Using optparse for command line API.
+        - Fixed Tool Shed dependency definition.
 ======= ======================================================================
 
 
@@ -64,7 +65,7 @@
 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball I use
 the following command from the Galaxy root folder::
 
-    $ tar -czf blast_rbh.tar.gz tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.xml tools/blast_rbh/blast_rbh.py tools/blast_rbh/repository_dependencies.xml test-data/rhodopsin_nucs.fasta test-data/rhodopsin_proteins.fasta test-data/three_human_mRNA.fasta test-data/four_human_proteins.fasta test-data/k12_edited_proteins.fasta test-data/k12_ten_proteins.fasta test-data/rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular test-data/rbh_blastp_four_human_vs_rhodopsin_proteins.tabular test-data/rbh_none.tabular test-data/rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastp_k12.tabular test-data/rbh_blastp_k12_self.tabular
+    $ tar -czf blast_rbh.tar.gz tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.xml tools/blast_rbh/blast_rbh.py tools/blast_rbh/tool_dependencies.xml test-data/rhodopsin_nucs.fasta test-data/rhodopsin_proteins.fasta test-data/three_human_mRNA.fasta test-data/four_human_proteins.fasta test-data/k12_edited_proteins.fasta test-data/k12_ten_proteins.fasta test-data/rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular test-data/rbh_blastp_four_human_vs_rhodopsin_proteins.tabular test-data/rbh_none.tabular test-data/rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastp_k12.tabular test-data/rbh_blastp_k12_self.tabular
 
 Check this worked::
 
@@ -72,7 +73,7 @@
     tools/blast_rbh/README.rst
     tools/blast_rbh/blast_rbh.xml
     tools/blast_rbh/blast_rbh.py
-    tools/blast_rbh/repository_dependencies.xml
+    tools/blast_rbh/tool_dependencies.xml
     test-data/rhodopsin_nucs.fasta
     test-data/rhodopsin_proteins.fasta
     test-data/three_human_mRNA.fasta

--- a/tools/blast_rbh/blast_rbh.xml	Wed Jun 11 06:34:14 2014 -0400
+++ b/tools/blast_rbh/blast_rbh.xml	Thu Jul 31 05:01:51 2014 -0400
@@ -232,4 +232,8 @@
 This wrapper is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/blast_rbh
     </help>
+    <citations>
+        <citation type="doi">10.1186/1471-2105-10-421</citation>
+        <!-- TODO: Add BibTeX entry / preprint DOI for Galaxy BLAST+ paper -->
+    </citations>
 </tool>

--- a/tools/blast_rbh/repository_dependencies.xml	Wed Jun 11 06:34:14 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-<?xml version="1.0"?>
-<repositories description="Requires the NCBI BLAST+ binaries.">
-    <repository changeset_revision="e78bbab7933d" name="package_blast_plus_2_2_29" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-</repositories>

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/blast_rbh/tool_dependencies.xml	Thu Jul 31 05:01:51 2014 -0400
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="blast+" version="2.2.29">
+        <repository changeset_revision="e78bbab7933d" name="package_blast_plus_2_2_29" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>